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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107670686_107671243_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107670686 - 107671243
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCCACATAAACT
Flanking Amino Acid:
VLKHLHDFLKLLHLDKRREY
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
82.3
0.73
0.9
76.1
37.8
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
49.8
0.06
2
69.55
46.9

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040872
107666017 - 107721163
55147
ENSAPLT00000019693
107666017 - 107721163
55147
ENSAPLT00000007441
107665547 - 107708202
42656
ENSAPLT00000041614
107666898 - 107721163
54266