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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107671406_107672718_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107671406 - 107672718
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
TYETLASDMQWKVRRTLAFS
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019693
107666017 - 107721163
55147
ENSAPLT00000007441
107665547 - 107708202
42656
ENSAPLT00000041614
107666898 - 107721163
54266
ENSAPLT00000040872
107666017 - 107721163
55147