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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10767401_10768603_F

Intron Information:

Intron Rank:
143079
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10767401 - 10768603
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGCAGATC
5'SS Class:
weak_major
3'SS Sequence:
TTTATTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTCTGCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.23
1.1
57.8
41.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.8
0.85
0.8
85.9
33.1
Minor 5ss
30.1
-2.3
3.5
42.3
45
Minor BPS
47.8
-0
2.3
73.51
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027077
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025865
10767238 - 10772925
5688