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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107682903_107684345_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107682903 - 107684345
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCACTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
PEDHGSSQENSEQIRTPEDV
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
81.1
32.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.7
0.42
1
62.7
38.2
Minor 5ss
33.3
-1.9
3.3
47.8
47.9
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007441
107665547 - 107708202
42656
ENSAPLT00000041614
107666898 - 107721163
54266
ENSAPLT00000040872
107666017 - 107721163
55147
ENSAPLT00000019693
107666017 - 107721163
55147