Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107685587_107686459_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107685587 - 107686459

Intron Length:

873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCCAC

5'SS Class:

strong_major

3'SS Sequence:

ATGTCCTGAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGCTAT

U12 Branch Point Sequence:

ATGTCCTGAACA

Flanking Amino Acid:

VGQQATEEMLLPRFFQLCSD

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

41.1

Major BPS

58.7

0.22

1.5

58.5

47.9

Major PPT

63.6

0.31

1.1

58.8

41.3

Minor 5ss

38.3

-1.3

3.1

47.8

42.4

Minor BPS

74.3

0.76

1.4

79.06

36.9

Associated Gene:

Gene:

PPP4R1

Ensembl Gene ID:

ENSAPLG00000007154

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041614

107666898 - 107721163

54266

ENSAPLT00000040872

107666017 - 107721163

55147

ENSAPLT00000019693

107666017 - 107721163

55147

ENSAPLT00000007441

107665547 - 107708202

42656