Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10768708_10772574_F

Intron Information:

Intron Rank:

143080

Intron Class:

major

Intron Phase:

Intron Coordinates:

10768708 - 10772574

Intron Length:

3867

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGCAGA

5'SS Class:

major

3'SS Sequence:

TACTGCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

ATCTCTTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

68.9

43.8

Major BPS

77.7

0.69

30.2

Major PPT

80.4

0.68

0.9

76.9

36.9

Minor 5ss

37.4

-1.4

3.1

48.6

47.2

Minor BPS

64.3

0.44

1.7

73.1

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027077

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025865

10767238 - 10772925

5688