Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107687371_107688941_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107687371 - 107688941

Intron Length:

1571

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

GTCTTGCCACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

TCATTCCTAATT

Flanking Amino Acid:

NDDVKTEAVAIMCKMASMVG

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

74.7

35.4

Major BPS

76.9

0.67

66.3

40.4

Major PPT

63.4

0.3

55.9

40.1

Minor 5ss

38.9

-1.2

2.8

55.7

41.6

Minor BPS

62.4

0.47

1.7

76.93

39.9

Associated Gene:

Gene:

PPP4R1

Ensembl Gene ID:

ENSAPLG00000007154

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040872

107666017 - 107721163

55147

ENSAPLT00000019693

107666017 - 107721163

55147

ENSAPLT00000007441

107665547 - 107708202

42656