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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107690701_107700591_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107690701 - 107700591
Intron Length:
9891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGACCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTATTTTGACC
Flanking Amino Acid:
ERISRLADDSEPTVRAELME
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
66.9
0.38
1
61.6
39.9
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
69.9
0.61
1.2
77.7
31.8

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041614
107666898 - 107721163
54266
ENSAPLT00000040872
107666017 - 107721163
55147
ENSAPLT00000019693
107666017 - 107721163
55147
ENSAPLT00000007441
107665547 - 107708202
42656