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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107700699_107708053_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
107700699 - 107708053
Intron Length:
7355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCTCGTAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATT
Flanking Amino Acid:
KYAASENIFNRQMVARSLLD
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
55.6
0.13
1
48.5
38.3
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
79.8
1.01
1
88.33
30.2

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041614
107666898 - 107721163
54266
ENSAPLT00000040872
107666017 - 107721163
55147
ENSAPLT00000019693
107666017 - 107721163
55147
ENSAPLT00000007441
107665547 - 107708202
42656