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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107708139_107720905_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107708139 - 107720905
Intron Length:
12767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
ATTATACCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATTATACCT
Flanking Amino Acid:
QEDLQEEIDGSLDFVSQDEM
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.2
0.59
0.9
71.7
38.9
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
48.4
-0
1.9
71.39
39.7

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041614
107666898 - 107721163
54266