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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107767580_107770557_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107767580 - 107770557
Intron Length:
2978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACCATAAAT
Flanking Amino Acid:
HFDHNISPTIGASFMTKTVP
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89.4
0.89
0.6
87.7
22.4
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
61.3
0.43
1.8
80.73
39.9

Associated Gene:

Gene:
RAB31
Ensembl Gene ID:
ENSAPLG00000006861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007148
107753431 - 107802530
49100