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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107770640_107784297_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107770640 - 107784297
Intron Length:
13658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
LIWDTAGQERFHSLAPMYYR
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.6
0.62
1
73.3
40.9
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
RAB31
Ensembl Gene ID:
ENSAPLG00000006861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007148
107753431 - 107802530
49100