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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107784370_107786052_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107784370 - 107786052
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTAGCTTATTT
Flanking Amino Acid:
AVIVYDITKQDSFHTLKKWV
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.8
0.47
0.9
69.5
35.9
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
57
0.3
2.1
80.47
41.8

Associated Gene:

Gene:
RAB31
Ensembl Gene ID:
ENSAPLG00000006861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007148
107753431 - 107802530
49100