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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107786160_107791320_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107786160 - 107791320
Intron Length:
5161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
AATTTTCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTGTCAATT
Flanking Amino Acid:
AGNKCDLSDIREVPIKDAKE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.6
0.67
0.8
73.9
35.9
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
52.5
0.16
2.2
76.85
40.1

Associated Gene:

Gene:
RAB31
Ensembl Gene ID:
ENSAPLG00000006861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007148
107753431 - 107802530
49100