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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107791431_107802432_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107791431 - 107802432
Intron Length:
11002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATGTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GAAAATTGAATT
Flanking Amino Acid:
VNIEELFQGISRQIPPLDPH
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.2
0.61
0.9
73.9
40.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
46.5
-0.1
1.6
57.99
38.2

Associated Gene:

Gene:
RAB31
Ensembl Gene ID:
ENSAPLG00000006861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007148
107753431 - 107802530
49100