About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107822257_107838264_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107822257 - 107838264
Intron Length:
16008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATATTTACAACA
Flanking Amino Acid:
LDPPTDLKFKGPFTDVVTTN
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
49.1
-0
1.7
63.61
36.2

Associated Gene:

Gene:
VAPA
Ensembl Gene ID:
ENSAPLG00000024122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040573
107822181 - 107850120
27940