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Intron Name: Anas_platyrhynchos_platyrhynchos_2_107838418_107843569_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107838418 - 107843569

Intron Length:

5152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTGTATAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTTTTTTATTC

Flanking Amino Acid:

IDPGSSVIVSVMLQPFDYDP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.5

0.73

0.8

79.8

32.4

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

61.1

0.33

1.5

68.82

37.9

Associated Gene:

Gene:

VAPA

Ensembl Gene ID:

ENSAPLG00000024122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040573

107822181 - 107850120

27940