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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107843674_107845307_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107843674 - 107845307
Intron Length:
1634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACTATATTAATT
Flanking Amino Acid:
PSNISDMEAVWKEAKPDELM
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.6
0.58
0.9
73.8
41.4
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
57.4
0.31
1.6
71.79
39.3

Associated Gene:

Gene:
VAPA
Ensembl Gene ID:
ENSAPLG00000024122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040573
107822181 - 107850120
27940