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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107849003_107849961_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107849003 - 107849961
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CTCCCCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTTTCTTCCATC
Flanking Amino Acid:
KLSEENRHLRDEGLRLRKVA
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
65
0.37
1.3
76.1
38
Major PPT
77
0.61
0.7
73.2
25
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
56.6
0.19
1.9
74.09
37.4

Associated Gene:

Gene:
VAPA
Ensembl Gene ID:
ENSAPLG00000024122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040573
107822181 - 107850120
27940