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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107866807_107878242_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107866807 - 107878242
Intron Length:
11436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAGAAA
U12 Branch Point Sequence:
TTCTCTTTGCCT
Flanking Amino Acid:
SYQPPLQNAKNHDRTCIACR
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
44.9
-0.3
1.2
48
32.8
Major PPT
79.3
0.66
0.8
73
31.9
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
48.5
-0
3.5
82.51
39.6

Associated Gene:

Gene:
APCDD1
Ensembl Gene ID:
ENSAPLG00000006589
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006843
107863793 - 107880464
16672