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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107878776_107880104_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107878776 - 107880104
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
CTTTCCATCACT
Flanking Amino Acid:
PNIEGHWVSTGCEVRAGPEF
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
78.8
0.65
0.8
73
31.5
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
62.7
0.48
2.1
84.77
41.8

Associated Gene:

Gene:
APCDD1
Ensembl Gene ID:
ENSAPLG00000006589
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006843
107863793 - 107880464
16672