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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107953660_107970598_F

Intron Information:

Intron Rank:
129455
Intron Class:
major
Intron Phase:
Intron Coordinates:
107953660 - 107970598
Intron Length:
16939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.5
0.82
0.8
81.6
34.7
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
77.9
0.95
1.1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019634
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045668
107952885 - 107970641
17757