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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107983190_107985417_F

Intron Information:

Intron Rank:
134363
Intron Class:
major
Intron Phase:
Intron Coordinates:
107983190 - 107985417
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTCCTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.2
0.68
0.7
78
30.4
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
86.3
1.23
1.4
100.6
26.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022223
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040225
107981699 - 107986370
4672