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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108056177_108056697_F

Intron Information:

Intron Rank:
142287
Intron Class:
major
Intron Phase:
Intron Coordinates:
108056177 - 108056697
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CATCCATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.6
0.85
0.7
80.1
32
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
63
0.49
1.6
76.1
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026626
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039949
108055747 - 108056748
1002