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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108067511_108077818_F

Intron Information:

Intron Rank:
133111
Intron Class:
major
Intron Phase:
Intron Coordinates:
108067511 - 108077818
Intron Length:
10308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTCAGCCAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
89.6
0.89
0.6
88.7
20.5
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
43.2
-0.4
2.3
64.83
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024033
108064747 - 108081320
16574