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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108077908_108079999_F

Intron Information:

Intron Rank:
133109
Intron Class:
major
Intron Phase:
Intron Coordinates:
108077908 - 108079999
Intron Length:
2092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
ACCTGTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.5
28.5
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
82
0.72
0.7
81.5
30.5
Minor 5ss
32.1
-2
3.1
40.5
45.7
Minor BPS
45.9
-0.2
1.9
59.89
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048112
108064747 - 108081320
16574
ENSAPLT00000024033
108064747 - 108081320
16574
ENSAPLT00000022540
108075829 - 108081320
5492