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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108134542_108135997_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108134542 - 108135997
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TCTTGTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATTGTTAATA
Flanking Amino Acid:
ALEHIAKAEKYLKTGFLKWK
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.1
49.5
41.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.9
0.67
0.8
78
35.1
Minor 5ss
32.1
-2
3.3
39
41.9
Minor BPS
57.5
0.23
2
68.8
37.7

Associated Gene:

Gene:
NAPG
Ensembl Gene ID:
ENSAPLG00000006422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006680
108134366 - 108145954
11589