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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108137849_108138430_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108137849 - 108138430
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTAACTAAATT
Flanking Amino Acid:
ENNKALFHAAKAYEQAGMML
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
53.7
0.2
1.9
73.4
43.7

Associated Gene:

Gene:
NAPG
Ensembl Gene ID:
ENSAPLG00000006422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006680
108134366 - 108145954
11589