About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108138462_108140015_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108138462 - 108140015
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
AGCTCCTGACGG
Flanking Amino Acid:
AYEQAGMMLKEMQRLPEAVQ
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
89.6
0.89
0.7
84.7
30.1
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
44.2
-0.5
2
47.16
45.6

Associated Gene:

Gene:
NAPG
Ensembl Gene ID:
ENSAPLG00000006422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006680
108134366 - 108145954
11589