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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108140126_108140235_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108140126 - 108140235
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
CTGTTTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCATCTGAAGA
Flanking Amino Acid:
TAAIALERAGKLIENVSPEK
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.5
39.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.8
0.6
0.9
71.5
38.3
Minor 5ss
49.2
-0
2.8
64.9
40.8
Minor BPS
50.9
0.02
1.8
64.33
42.1

Associated Gene:

Gene:
NAPG
Ensembl Gene ID:
ENSAPLG00000006422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006680
108134366 - 108145954
11589