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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108143133_108144594_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108143133 - 108144594
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGTCCTAAATA
Flanking Amino Acid:
AAERCVRESYSIPGFNGSED
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.8
0.76
0.8
81.7
35.4
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
66.8
0.52
1.6
73.39
39

Associated Gene:

Gene:
NAPG
Ensembl Gene ID:
ENSAPLG00000006422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006680
108134366 - 108145954
11589