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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108185645_108187531_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108185645 - 108187531
Intron Length:
1887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TCATTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCTCATTT
Flanking Amino Acid:
TMMSGKQSEKVTLETVYPYY
Intron Amino Acid Position:
2648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77
34.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.5
0.84
0.8
80.4
36.9
Minor 5ss
43.9
-0.7
2.9
59
45.5
Minor BPS
50.2
0.08
1.8
68.21
43.2

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446