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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108191836_108193932_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108191836 - 108193932
Intron Length:
2097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GAGACATTACTA
Flanking Amino Acid:
ILKCWRESEKRYPQPRGQKK
Intron Amino Acid Position:
2458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
72.4
38.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
89.3
0.88
0.7
84.5
30.4
Minor 5ss
33.3
-1.9
3.2
39.9
40.1
Minor BPS
45.4
-0.3
1.8
51.37
40

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446