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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108194081_108195435_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108194081 - 108195435
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTGACTAATC
Flanking Amino Acid:
YNYVNLFLFQGFRLVPFLTE
Intron Amino Acid Position:
2408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.7
0.62
0.8
73.7
31.4
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
46.3
-0.3
2.2
63.95
41.9

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446