About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108204670_108210714_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108204670 - 108210714
Intron Length:
6045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCATC
5'SS Class:
major
3'SS Sequence:
TTTGCGCTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTGTATTTAACA
Flanking Amino Acid:
DSAASRDSISSCYTEATMLF
Intron Amino Acid Position:
1771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
70.7
39.5
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
65.4
0.35
1
58.7
43
Minor 5ss
50.5
0.02
2.4
69.4
41.3
Minor BPS
73.4
0.73
1.4
80.14
35.8

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446