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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108210891_108215194_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108210891 - 108215194
Intron Length:
4304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCCT
5'SS Class:
major
3'SS Sequence:
ATCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTTTCCTTATCT
Flanking Amino Acid:
RCMLTREIKKGNVPTRESIH
Intron Amino Acid Position:
1713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
67
44.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
85.5
0.8
0.8
79.9
31.5
Minor 5ss
38.9
-1.2
3.4
57.5
46.7
Minor BPS
78.6
0.98
1.5
91.83
37.8

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446