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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108215362_108218517_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108215362 - 108218517
Intron Length:
3156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATCCATTAACT
Flanking Amino Acid:
EHVKKKSDGPDNIIKRIFNI
Intron Amino Acid Position:
1657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
71.8
0.49
0.7
69.8
24.2
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
67.1
0.61
1.6
80.35
40.8

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446