About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108218584_108220450_R


Intron Information:

Intron Rank:
33

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
108218584 - 108220450

Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTATGTATG

5'SS Class:
strong_major

3'SS Sequence:
TTGCTTTCAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CATTCAT

U12 Branch Point Sequence:
TTGCTTTCAACA

Flanking Amino Acid:
QKRRRKGSGDGGTDADYEDS

Intron Amino Acid Position:
1635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.6
0.74
0.9
76.2
39

Major BPS
79.8
0.74
0.9
81.3
29.9

Major PPT
77.1
0.61
0.9
73.6
35.7

Minor 5ss
45.6
-0.5
2.5
56.4
42.4

Minor BPS
58.5
0.26
1.5
68.45
38.1

Associated Gene:

Gene:
PIEZO2

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

108182771 - 108436216
253446