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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108220563_108222905_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108220563 - 108222905
Intron Length:
2343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAC
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GAACCTTGAAAT
Flanking Amino Acid:
ILQYLIKVAKFVYQAWITDP
Intron Amino Acid Position:
1598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
74.4
35.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
49.6
0.05
1.5
63.32
39.7

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446