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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108237577_108246872_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108237577 - 108246872
Intron Length:
9296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAAACT
5'SS Class:
major
3'SS Sequence:
CTTTTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
CCTTCTTTTACT
Flanking Amino Acid:
HNPVPDFIYCRSYLDMYKVI
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
71.8
37.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
86.2
0.81
0.8
77.8
35.6
Minor 5ss
36
-1.6
3.1
51.3
44.8
Minor BPS
67.4
0.63
1.6
79.44
43

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446