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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108247039_108247495_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108247039 - 108247495
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TGCTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCCTTGCAACC
Flanking Amino Acid:
IVRPNPVFLVYDFMLLLCAS
Intron Amino Acid Position:
1213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.2
0.59
0.8
69.4
36.9
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
45
-0.3
2.1
59
40.5

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446