About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108247598_108247750_R


Intron Information:

Intron Rank:
22

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
108247598 - 108247750

Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGTACG

5'SS Class:
strong_major

3'SS Sequence:
TTCTGTCATATAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTGAT

U12 Branch Point Sequence:
GCTTCTGTCATA

Flanking Amino Acid:
CIGIPPAPCKDYPWRSGNAN

Intron Amino Acid Position:
1179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
95.6
1.07
0.7
84.4
33.5

Major BPS
83.5
0.83
0.8
71.6
36.4

Major PPT
74.4
0.55
0.9
69.5
36

Minor 5ss
36
-1.6
2.6
43.2
43.8

Minor BPS
45.5
-0.3
2.3
58.91
41.9

Associated Gene:

Gene:
PIEZO2

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

108182771 - 108436216
253446