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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108247956_108251347_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108247956 - 108251347
Intron Length:
3392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTTCACA
Flanking Amino Acid:
NYFFYKFGLETCFLLSVNVI
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
84.6
0.78
0.7
79.5
26
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
75.6
0.8
1.7
83.03
38.2

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446