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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108253690_108254624_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108253690 - 108254624
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCTCTCCATC
Flanking Amino Acid:
SYIIWVTVKEVSLFNFVFLI
Intron Amino Acid Position:
943

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
49.3
-0
1.9
67.51
38.4

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446