About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108273169_108273641_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
108273169 - 108273641

Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGTGAAA

5'SS Class:
major

3'SS Sequence:
TTTTTCTACTTAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TAAGAAT

U12 Branch Point Sequence:
TCTTTTTCTACT

Flanking Amino Acid:
YKWEPSDDMSEKEEEEGEEE

Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.4
0.5
1.1
67.7
39

Major BPS
55.1
0.13
1.4
64.3
39.7

Major PPT
81.4
0.71
0.8
82.1
28.7

Minor 5ss
30.3
-2.3
3.3
39.1
46.3

Minor BPS
53.7
0.2
1.9
75.28
41.8

Associated Gene:

Gene:
PIEZO2

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

108182771 - 108436216
253446