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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10829693_10830704_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10829693 - 10830704
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CGAATCTTAATT
Flanking Amino Acid:
QILTDFPKLDDIHPFYADLM
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.5
0.8
0.7
84.6
30.4
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
62.8
0.48
1.3
69.87
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014423
10828809 - 10838800
9992