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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108310192_108324674_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
108310192 - 108324674
Intron Length:
14483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATCAAAT
5'SS Class:
weak_major
3'SS Sequence:
CCTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
CNTQFENEEMAVREKLEPDD
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.2
66
39.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.5
0.71
0.7
80
25.3
Minor 5ss
46.9
-0.3
2.7
63
43.6
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446