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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108324838_108349703_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108324838 - 108349703
Intron Length:
24866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TCATCCCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATC
Flanking Amino Acid:
EKTLRQIGFESVKGADAGNV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
77.9
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
72.4
0.5
0.9
65.8
34.8
Minor 5ss
39.5
-1.2
3.2
55.8
48.4
Minor BPS
56.6
0.19
1.7
70.66
35.2

Associated Gene:

Gene:
PIEZO2
Ensembl Gene ID:
ENSAPLG00000013228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013813
108182771 - 108436216
253446