About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10832667_10833407_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10832667 - 10833407
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATGTCATTATTT
Flanking Amino Acid:
RIAELPEESQKIFETFEAEG
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
84.6
0.78
0.8
81.9
34.4
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
57
0.3
1.9
75.51
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014423
10828809 - 10838800
9992