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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10834527_10834634_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10834527 - 10834634
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TATGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
AGATATATAAAG
Flanking Amino Acid:
MEVDTPRRKTERDLELEMGD
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
83.3
0.75
0.9
77.3
36.6
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
44
-0.5
1.8
47.24
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014423
10828809 - 10838800
9992